uc-0001: Researcher Browse and Filter

Persona

Objective

Description

Pam wants to build a table of the summarized metadata from each RNA-Seq dataset in the Common Fund that relates to the liver.

Pam connects to the CFDE interface Web site and decides to browse the portal by Project. They narrow the results to studies that used RNA-seq assay type and liver anatomy terms with the Refine search filters. Pam exports the search results by clicking "Export".

Using data portal links on the exported manifest, Pam accesses the Common Fund Program data portals for each dataset, where they can request access to the data that fits their needs. They also send their final table to their postdoc, Lacey, who will do the actual analysis.

Tasks for this use case:

t-0001: Access CFDE interface ✅ June 2020
t-0019: Search/filter data sets by project ✅ June 2020
t-0004: Search within dataset descriptions ✅ June 2020
t-0005: Search/filter data by assay type terms ✅ June 2020
t-0006: Search/filter data sets by anatomic terms ✅ June 2020
t-0010: Visualize a table of all datasets that match query ✅ June 2020
t-0003: Export a file of results ✅ June 2020
t-0002: Use link within the CFDE interface to access original data source

Requirements for this use case:

r-00001: The interface will support GUI web access to end users ✅ June 2020
r-00002: The interface will support user authentication ✅ June 2020
r-00003: The interface will support the selection of an Uberon term of interest ✅ June 2020
r-00004: The C2M2 model will support information relating anatomy terms to CF programs ✅ June 2020
r-00005: The catalog will store information relating anatomy terms to CF programs ✅ June 2020
r-00006: The interface will support the selection of an assay type term of interest ✅ June 2020
r-00007: The C2M2 model will support information relating assay types to CF programs ✅ June 2020
r-00008: The catalog will store information relating assay types to CF programs ✅ June 2020
r-00009: The interface will support free text search of results ✅ June 2020
r-00010: The catalog will store information relating projects to CF programs ✅ June 2020
r-00011: The C2M2 model will support information relating projects to CF programs ✅ June 2020
r-00012: The interface will render tables and plots to display filtered data ✅ June 2020
r-00013: The interface will support links to original data sources within the results ✅ June 2020
r-00014: The interface will support end user download of tables and figures in common formats ✅ June 2020
r-00032: The C2M2 model will support links to original data sources
r-00033: The catalog will support links to original data sources